Detailed information of SNP:
|
SNP ID:
sf1109935134(Gbrowse)
Chromosome: chr11 Position: 9935134 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 72.30% | 27.70% |
| All Indica | 780 | 55.77% | 44.23% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 64 | 65.62% | 34.38% |
| Indica I | 371 | 55.53% | 44.47% |
| Indica II | 201 | 44.78% | 55.22% |
| Indica Intermediate | 208 | 66.83% | 33.17% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109935134 | A->G | INTERGENIC | None |