Detailed information of SNP:
|
SNP ID:
sf1109944575(Gbrowse)
Chromosome: chr11 Position: 9944575 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 97.53% | 2.47% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109944575 | T->C | LOC_Os11g17770(LOC_Os11g17770.1) | INTRON |