Detailed information of SNP:
|
SNP ID:
sf1109954198(Gbrowse)
Chromosome: chr11 Position: 9954198 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 59.22% | 40.78% |
| All Indica | 796 | 87.56% | 12.44% |
| All Japonica | 495 | 9.09% | 90.91% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 373 | 93.83% | 6.17% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 11.04% | 88.96% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 66 | 6.06% | 93.94% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109954198 | A->G | INTERGENIC | None |