Detailed information of SNP:
|
SNP ID:
sf1110006845(Gbrowse)
Chromosome: chr11 Position: 10006845 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 94.05% | 5.95% |
| All Indica | 791 | 95.07% | 4.93% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 370 | 92.70% | 7.30% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 335 | 92.54% | 7.46% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110006845 | T->C | INTERGENIC | None |