Detailed information of SNP:
|
SNP ID:
sf1110007147(Gbrowse)
Chromosome: chr11 Position: 10007147 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 94.06% | 5.94% |
| All Indica | 795 | 95.09% | 4.91% |
| All Japonica | 495 | 93.54% | 6.46% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 91.64% | 8.36% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 333 | 92.19% | 7.81% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110007147 | A->G | LOC_Os11g17880(LOC_Os11g17880.1) | Non-Synonymous SNP |