Detailed information of SNP:
|
SNP ID:
sf1110025567(Gbrowse)
Chromosome: chr11 Position: 10025567 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 93.06% | 6.94% |
| All Indica | 797 | 97.62% | 2.38% |
| All Japonica | 493 | 83.98% | 16.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.32% | 2.68% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 331 | 78.85% | 21.15% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110025567 | A->G | INTERGENIC | None |