Detailed information of SNP:
|
SNP ID:
sf1110028117(Gbrowse)
Chromosome: chr11 Position: 10028117 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 90.50% | 9.50% |
| All Indica | 782 | 89.64% | 10.36% |
| All Japonica | 496 | 92.94% | 7.06% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 366 | 87.70% | 12.30% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 204 | 88.24% | 11.76% |
| Temperate Japonica | 334 | 91.62% | 8.38% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110028117 | A->G | LOC_Os11g17890(LOC_Os11g17890.1) | Non-Synonymous SNP |