Detailed information of SNP:
|
SNP ID:
sf1110028297(Gbrowse)
Chromosome: chr11 Position: 10028297 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 91.23% | 8.77% |
| All Indica | 766 | 86.68% | 13.32% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 63 | 76.19% | 23.81% |
| Indica I | 364 | 93.96% | 6.04% |
| Indica II | 198 | 77.78% | 22.22% |
| Indica Intermediate | 204 | 82.35% | 17.65% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110028297 | G->A | LOC_Os11g17890(LOC_Os11g17890.1) | Synonymous |