Detailed information of SNP:
|
SNP ID:
sf1110028874(Gbrowse)
Chromosome: chr11 Position: 10028874 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1320 | 66.52% | 33.48% |
| All Indica | 724 | 54.14% | 45.86% |
| All Japonica | 484 | 88.84% | 11.16% |
| Aus | 60 | 41.67% | 58.33% |
| Indica I | 338 | 57.40% | 42.60% |
| Indica II | 194 | 47.94% | 52.06% |
| Indica Intermediate | 192 | 54.69% | 45.31% |
| Temperate Japonica | 322 | 86.34% | 13.66% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 38 | 57.89% | 42.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110028874 | G->A | LOC_Os11g17890(LOC_Os11g17890.1) | INTRON |