Detailed information of SNP:
|
SNP ID:
sf1110029485(Gbrowse)
Chromosome: chr11 Position: 10029485 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1348 | 88.65% | 11.35% |
| All Indica | 739 | 82.27% | 17.73% |
| All Japonica | 494 | 97.77% | 2.23% |
| Aus | 61 | 91.80% | 8.20% |
| Indica I | 359 | 81.89% | 18.11% |
| Indica II | 188 | 83.51% | 16.49% |
| Indica Intermediate | 192 | 81.77% | 18.23% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110029485 | C->G | LOC_Os11g17890(LOC_Os11g17890.1) | INTRON |