Detailed information of SNP:
|
SNP ID:
sf1110032080(Gbrowse)
Chromosome: chr11 Position: 10032080 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1311 | 76.13% | 23.87% |
| All Indica | 703 | 62.16% | 37.84% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 58 | 56.90% | 43.10% |
| Indica I | 341 | 61.29% | 38.71% |
| Indica II | 173 | 60.12% | 39.88% |
| Indica Intermediate | 189 | 65.61% | 34.39% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110032080 | T->A | INTERGENIC | None |