Detailed information of SNP:
|
SNP ID:
sf1110068755(Gbrowse)
Chromosome: chr11 Position: 10068755 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 55.64% | 44.36% |
| All Indica | 798 | 85.21% | 14.79% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 90.64% | 9.36% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 63.03% | 36.97% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110068755 | C->T | INTERGENIC | None |