Detailed information of SNP:
|
SNP ID:
sf1110102905(Gbrowse)
Chromosome: chr11 Position: 10102905 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 95.55% | 4.45% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 64 | 25.00% | 75.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110102905 | C->T | LOC_Os11g17990(LOC_Os11g17990.1) | Non-Synonymous SNP |