Detailed information of SNP:
|
SNP ID:
sf1110107532(Gbrowse)
Chromosome: chr11 Position: 10107532 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 56.60% | 43.40% |
| All Indica | 797 | 86.70% | 13.30% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 91.15% | 8.85% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110107532 | A->G | LOC_Os11g17990(LOC_Os11g17990.1) | Synonymous |