Detailed information of SNP:
|
SNP ID:
sf1110109387(Gbrowse)
Chromosome: chr11 Position: 10109387 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 75.52% | 24.48% |
| All Indica | 782 | 58.70% | 41.30% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 75.00% | 25.00% |
| Indica II | 211 | 23.22% | 76.78% |
| Indica Intermediate | 207 | 66.18% | 33.82% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110109387 | C->T | INTERGENIC | None |