Detailed information of SNP:
|
SNP ID:
sf1110126001(Gbrowse)
Chromosome: chr11 Position: 10126001 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 58.80% | 41.20% |
| All Indica | 798 | 89.72% | 10.28% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 71.90% | 28.10% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110126001 | T->C | INTERGENIC | None |