Detailed information of SNP:
|
SNP ID:
sf1110137991(Gbrowse)
Chromosome: chr11 Position: 10137991 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1366 | 92.17% | 7.83% |
| All Indica | 748 | 86.50% | 13.50% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 355 | 100.00% | 0.00% |
| Indica II | 190 | 58.42% | 41.58% |
| Indica Intermediate | 203 | 89.16% | 10.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110137991 | C->G | LOC_Os11g18044(LOC_Os11g18044.1) | Synonymous |