Detailed information of SNP:
|
SNP ID:
sf1110149282(Gbrowse)
Chromosome: chr11 Position: 10149282 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 65.98% | 34.02% |
| All Indica | 797 | 50.82% | 49.18% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 64.80% | 35.20% |
| Indica II | 213 | 22.07% | 77.93% |
| Indica Intermediate | 209 | 55.02% | 44.98% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110149282 | T->C | INTERGENIC | None |