Detailed information of SNP:



SNP ID: sf1110151988(Gbrowse)

Chromosome: chr11

Position: 10151988
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 95.56% 4.44%
All Indica799 100.00% 0.00%
All Japonica497 100.00% 0.00%
Aus67 19.40% 80.60%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 80.95% 19.05%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1110151988 C->T LOC_Os11g18070(LOC_Os11g18070.1) INTRON