Detailed information of SNP:



SNP ID: sf1110277342(Gbrowse)

Chromosome: chr11

Position: 10277342
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 97.88% 2.12%
All Indica799 100.00% 0.00%
All Japonica496 94.15% 5.85%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica93 73.12% 26.88%
Japonica Intermediate68 95.59% 4.41%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1110277342 C->T LOC_Os11g18240(LOC_Os11g18240.1) Non-Synonymous SNP