Detailed information of SNP:
|
SNP ID:
sf1110294804(Gbrowse)
Chromosome: chr11 Position: 10294804 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 52.66% | 47.34% |
| All Indica | 797 | 83.69% | 16.31% |
| All Japonica | 496 | 6.05% | 93.95% |
| Aus | 62 | 27.42% | 72.58% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 209 | 57.89% | 42.11% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 93 | 20.43% | 79.57% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110294804 | A->G | LOC_Os11g18290(LOC_Os11g18290.1) | Synonymous |