Detailed information of SNP:
|
SNP ID:
sf1110365291(Gbrowse)
Chromosome: chr11 Position: 10365291 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 97.39% | 2.61% |
| All Indica | 798 | 95.86% | 4.14% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110365291 | T->A | LOC_Os11g18366(LOC_Os11g18366.2) | INTRON |
| sf1110365291 | T->A | LOC_Os11g18366(LOC_Os11g18366.3) | INTRON |
| sf1110365291 | T->A | LOC_Os11g18366(LOC_Os11g18366.4) | INTRON |