Detailed information of SNP:
|
SNP ID:
sf1110411647(Gbrowse)
Chromosome: chr11 Position: 10411647 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 56.63% | 43.37% |
| All Indica | 798 | 86.22% | 13.78% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 59.05% | 40.95% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110411647 | G->A | LOC_Os11g18470(LOC_Os11g18470.1) | INTRON |