Detailed information of SNP:
|
SNP ID:
sf1110431114(Gbrowse)
Chromosome: chr11 Position: 10431114 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 96.79% | 3.21% |
| All Indica | 788 | 95.05% | 4.95% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 94.85% | 5.15% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 209 | 93.30% | 6.70% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110431114 | T->C | LOC_Os11g18510(LOC_Os11g18510.1) | Synonymous |