Detailed information of SNP:
|
SNP ID:
sf1110431586(Gbrowse)
Chromosome: chr11 Position: 10431586 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 93.47% | 6.53% |
| All Indica | 791 | 89.38% | 10.62% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 367 | 79.02% | 20.98% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110431586 | G->A | LOC_Os11g18510(LOC_Os11g18510.1) | Non-Synonymous SNP |