Detailed information of SNP:
|
SNP ID:
sf1110487212(Gbrowse)
Chromosome: chr11 Position: 10487212 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1383 | 92.12% | 7.88% |
| All Indica | 765 | 87.58% | 12.42% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 360 | 90.28% | 9.72% |
| Indica II | 200 | 85.00% | 15.00% |
| Indica Intermediate | 205 | 85.37% | 14.63% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110487212 | A->G | INTERGENIC | None |