Detailed information of SNP:
|
SNP ID:
sf1110536778(Gbrowse)
Chromosome: chr11 Position: 10536778 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1320 | 83.33% | 16.67% |
| All Indica | 704 | 71.73% | 28.27% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 349 | 80.52% | 19.48% |
| Indica II | 164 | 42.68% | 57.32% |
| Indica Intermediate | 191 | 80.63% | 19.37% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110536778 | G->A | INTERGENIC | None |