Detailed information of SNP:
|
SNP ID:
sf1110581437(Gbrowse)
Chromosome: chr11 Position: 10581437 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 75.53% | 24.47% |
| All Indica | 790 | 61.52% | 38.48% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 371 | 58.76% | 41.24% |
| Indica II | 212 | 50.94% | 49.06% |
| Indica Intermediate | 207 | 77.29% | 22.71% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110581437 | G->A | INTERGENIC | None |