Detailed information of SNP:
|
SNP ID:
sf1110722489(Gbrowse)
Chromosome: chr11 Position: 10722489 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.39% | 41.61% |
| All Indica | 799 | 89.99% | 10.01% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110722489 | G->A | INTERGENIC | None |