Detailed information of SNP:
|
SNP ID:
sf1110735425(Gbrowse)
Chromosome: chr11 Position: 10735425 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 96.48% | 3.52% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110735425 | C->T | LOC_Os11g18880(LOC_Os11g18880.1) | Non-Synonymous SNP |
| sf1110735425 | C->T | LOC_Os11g18880(LOC_Os11g18880.2) | Non-Synonymous SNP |
| sf1110735425 | C->T | LOC_Os11g18880(LOC_Os11g18880.3) | Non-Synonymous SNP |