Detailed information of SNP:
SNP ID:
sf1110759080(Gbrowse)
Chromosome: chr11 Position: 10759080 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1405 | 91.03% | 8.97% |
All Indica | 785 | 85.10% | 14.90% |
All Japonica | 497 | 98.99% | 1.01% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 367 | 75.75% | 24.25% |
Indica II | 211 | 94.79% | 5.21% |
Indica Intermediate | 207 | 91.79% | 8.21% |
Temperate Japonica | 335 | 98.81% | 1.19% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1110759080 | C->T | INTERGENIC | None |