Detailed information of SNP:
|
SNP ID:
sf1110778181(Gbrowse)
Chromosome: chr11 Position: 10778181 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 94.85% | 5.15% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 37.88% | 62.12% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110778181 | T->A | INTERGENIC | None |