Detailed information of SNP:
|
SNP ID:
sf1110830192(Gbrowse)
Chromosome: chr11 Position: 10830192 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 93.59% | 6.41% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 483 | 82.61% | 17.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 326 | 95.71% | 4.29% |
| Tropical Japonica | 93 | 52.69% | 47.31% |
| Japonica Intermediate | 64 | 59.38% | 40.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110830192 | G->T | INTERGENIC | None |