Detailed information of SNP:
|
SNP ID:
sf1110832272(Gbrowse)
Chromosome: chr11 Position: 10832272 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 53.74% | 46.26% |
| All Indica | 797 | 83.31% | 16.69% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 373 | 90.08% | 9.92% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110832272 | C->T | INTERGENIC | None |