Detailed information of SNP:
|
SNP ID:
sf1110839718(Gbrowse)
Chromosome: chr11 Position: 10839718 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1315 | 90.34% | 9.66% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 400 | 68.50% | 31.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 261 | 55.17% | 44.83% |
| Tropical Japonica | 82 | 98.78% | 1.22% |
| Japonica Intermediate | 57 | 85.96% | 14.04% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110839718 | G->A | INTERGENIC | None |