Detailed information of SNP:
|
SNP ID:
sf1110897165(Gbrowse)
Chromosome: chr11 Position: 10897165 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 58.78% | 41.22% |
| All Indica | 797 | 88.21% | 11.79% |
| All Japonica | 475 | 5.05% | 94.95% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 94.91% | 5.09% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 318 | 6.29% | 93.71% |
| Tropical Japonica | 91 | 2.20% | 97.80% |
| Japonica Intermediate | 66 | 3.03% | 96.97% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110897165 | T->C | LOC_Os11g19110(LOC_Os11g19110.1) | Non-Synonymous SNP |