Detailed information of SNP:
|
SNP ID:
sf1110919990(Gbrowse)
Chromosome: chr11 Position: 10919990 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 74.86% | 25.14% |
| All Indica | 799 | 59.20% | 40.80% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 46 | 78.26% | 21.74% |
| Indica I | 375 | 48.53% | 51.47% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110919990 | G->A | LOC_Os11g19149(LOC_Os11g19149.2) | UTR_5_PRIME |
| sf1110919990 | G->A | LOC_Os11g19149(LOC_Os11g19149.1) | UTR_5_PRIME |