Detailed information of SNP:
|
SNP ID:
sf1110989154(Gbrowse)
Chromosome: chr11 Position: 10989154 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1304 | 93.56% | 6.44% |
| All Indica | 701 | 89.87% | 10.13% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 57 | 85.96% | 14.04% |
| Indica I | 330 | 89.09% | 10.91% |
| Indica II | 183 | 89.62% | 10.38% |
| Indica Intermediate | 188 | 91.49% | 8.51% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1110989154 | C->T | LOC_Os11g19230(LOC_Os11g19230.1) | Synonymous |