Detailed information of SNP:
|
SNP ID:
sf1111001116(Gbrowse)
Chromosome: chr11 Position: 11001116 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1301 | 68.56% | 31.44% |
| All Indica | 687 | 49.20% | 50.80% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 285 | 31.58% | 68.42% |
| Indica II | 205 | 63.41% | 36.59% |
| Indica Intermediate | 197 | 59.90% | 40.10% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 75.68% | 24.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111001116 | T->C | INTERGENIC | None |