Detailed information of SNP:
|
SNP ID:
sf1111003378(Gbrowse)
Chromosome: chr11 Position: 11003378 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 51.31% | 48.69% |
| All Indica | 797 | 25.72% | 74.28% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 40.00% | 60.00% |
| Indica II | 213 | 3.29% | 96.71% |
| Indica Intermediate | 209 | 22.97% | 77.03% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111003378 | A->T | INTERGENIC | None |