Detailed information of SNP:
|
SNP ID:
sf1111017826(Gbrowse)
Chromosome: chr11 Position: 11017826 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 58.50% | 41.50% |
| All Indica | 795 | 91.07% | 8.93% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 372 | 95.97% | 4.03% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 79.52% | 20.48% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111017826 | A->T | INTERGENIC | None |