Detailed information of SNP:
|
SNP ID:
sf1111069198(Gbrowse)
Chromosome: chr11 Position: 11069198 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 57.34% | 42.66% |
| All Indica | 796 | 33.54% | 66.46% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 374 | 9.36% | 90.64% |
| Indica II | 211 | 61.61% | 38.39% |
| Indica Intermediate | 211 | 48.34% | 51.66% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111069198 | T->C | LOC_Os11g19330(LOC_Os11g19330.1) | INTRON |