Detailed information of SNP:
|
SNP ID:
sf1111070079(Gbrowse)
Chromosome: chr11 Position: 11070079 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 57.23% | 42.77% |
| All Indica | 797 | 33.38% | 66.62% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 373 | 8.04% | 91.96% |
| Indica II | 213 | 61.50% | 38.50% |
| Indica Intermediate | 211 | 49.76% | 50.24% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111070079 | G->A | LOC_Os11g19330(LOC_Os11g19330.1) | Non-Synonymous SNP |