Detailed information of SNP:
|
SNP ID:
sf1111100884(Gbrowse)
Chromosome: chr11 Position: 11100884 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 52.92% | 47.08% |
| All Indica | 799 | 26.78% | 73.22% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 4.80% | 95.20% |
| Indica II | 213 | 55.87% | 44.13% |
| Indica Intermediate | 211 | 36.49% | 63.51% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111100884 | G->A | INTERGENIC | None |