Detailed information of SNP:
|
SNP ID:
sf1111102123(Gbrowse)
Chromosome: chr11 Position: 11102123 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 52.71% | 47.29% |
| All Indica | 799 | 26.16% | 73.84% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 4.80% | 95.20% |
| Indica II | 213 | 54.93% | 45.07% |
| Indica Intermediate | 211 | 35.07% | 64.93% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111102123 | G->A | INTERGENIC | None |