Detailed information of SNP:
|
SNP ID:
sf1111139919(Gbrowse)
Chromosome: chr11 Position: 11139919 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 71.48% | 28.52% |
| All Indica | 769 | 49.93% | 50.07% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 37.25% | 62.75% |
| Indica II | 207 | 62.32% | 37.68% |
| Indica Intermediate | 205 | 59.51% | 40.49% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111139919 | G->A | INTERGENIC | None |