Detailed information of SNP:
|
SNP ID:
sf1111141767(Gbrowse)
Chromosome: chr11 Position: 11141767 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1355 | 97.05% | 2.95% |
| All Indica | 784 | 99.62% | 0.38% |
| All Japonica | 449 | 92.65% | 7.35% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 99.46% | 0.54% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 200 | 99.50% | 0.50% |
| Temperate Japonica | 300 | 93.67% | 6.33% |
| Tropical Japonica | 84 | 92.86% | 7.14% |
| Japonica Intermediate | 65 | 87.69% | 12.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111141767 | A->T | INTERGENIC | None |