Detailed information of SNP:
|
SNP ID:
sf1111149189(Gbrowse)
Chromosome: chr11 Position: 11149189 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 58.01% | 41.99% |
| All Indica | 796 | 91.33% | 8.67% |
| All Japonica | 495 | 4.04% | 95.96% |
| Aus | 52 | 65.38% | 34.62% |
| Indica I | 373 | 88.47% | 11.53% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 333 | 5.11% | 94.89% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111149189 | T->C | LOC_Os11g19390(LOC_Os11g19390.1) | Synonymous |