Detailed information of SNP:
|
SNP ID:
sf1111157269(Gbrowse)
Chromosome: chr11 Position: 11157269 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 57.89% | 42.11% |
| All Indica | 794 | 90.93% | 9.07% |
| All Japonica | 496 | 2.62% | 97.38% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 373 | 91.69% | 8.31% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 209 | 87.08% | 12.92% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111157269 | T->C | LOC_Os11g19410(LOC_Os11g19410.1) | Synonymous |