Detailed information of SNP:
|
SNP ID:
sf1111252933(Gbrowse)
Chromosome: chr11 Position: 11252933 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 64.82% | 35.18% |
| All Indica | 791 | 40.58% | 59.42% |
| All Japonica | 496 | 97.38% | 2.62% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 367 | 27.52% | 72.48% |
| Indica II | 213 | 55.87% | 44.13% |
| Indica Intermediate | 211 | 47.87% | 52.13% |
| Temperate Japonica | 334 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111252933 | G->A | INTERGENIC | None |